CDS

Accession Number TCMCG015C36893
gbkey CDS
Protein Id XP_027067143.1
Location complement(join(32870324..32871089,32873093..32873239,32874547..32874711,32874799..32874929,32875103..32875208,32875287..32875386,32875463..32875588,32876015..32876215,32876333..32876420,32877385..32877433,32877516..32877611,32879353..32879411,32879496..32879530,32879617..32879741,32881900..32881975,32883131..32883286,32883460..32883466,32883549..32883586,32883695..32883774,32885914..32885985,32886628..32886719,32886943..32887017,32887365..32887501,32887643..32887728,32888572..32888663,32889370..32889708))
Gene LOC113692785
GeneID 113692785
Organism Coffea arabica

Protein

Length 1147aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA506972
db_source XM_027211342.1
Definition DNA ligase 4-like isoform X3 [Coffea arabica]

EGGNOG-MAPPER Annotation

COG_category L
Description RNA ligase
KEGG_TC -
KEGG_Module -
KEGG_Reaction R00381        [VIEW IN KEGG]
KEGG_rclass RC00005        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10777        [VIEW IN KEGG]
EC 6.5.1.1        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03450        [VIEW IN KEGG]
map03450        [VIEW IN KEGG]
GOs GO:0000726        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003909        [VIEW IN EMBL-EBI]
GO:0003910        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005576        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006266        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006297        [VIEW IN EMBL-EBI]
GO:0006302        [VIEW IN EMBL-EBI]
GO:0006303        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010165        [VIEW IN EMBL-EBI]
GO:0010212        [VIEW IN EMBL-EBI]
GO:0016874        [VIEW IN EMBL-EBI]
GO:0016886        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032807        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048046        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051103        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAGGAATCGGACATCAAATTCAACGTGATGGTTTCCTTATTCAACTGGATGCAGAAGAGCAAATCCTCGGCGACGAAGCGTTCCAAGTTCCGCAAATTCCTCGATGCTTTCTGCCGGGAACCGGGGGACTATTTCAGCGCCATCCGCCTCATTCTGCCGGTGCTCGACCGCGAGCGCGGTTCGTATGGACTCAAGGAGCACGCGCTTGCCACCTGCCTCATTGACGCCCTCGGCATGTCGCGTGACTCCCCGGACGCCCAACGCCTCCTCAATTGGCGCAAAGGTGGCCCCAAAACAGGCTCCAGCGCCGGCAACTTCTCCCTCGTCGCCTCCGAGGTCTTACAGAGAAGGCAAGGCTTGACTTCTGGCGGGCTGACTTTAAAAGAATTAAATGAACAGCTTGATCGCTTGTCTTCAAGTGAAAATAGAGCAGAGAAAACTGCAGTTCTTTCTGATTTGATCAGGAGAACAAACGCTCAAGAAATGAAGTGGATCATTATGATAATTCTCAAAGATCTGAAGTTGGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCGGATGCGGAGGACTTGTTCAATGTCACATGTGATTTGAAACTAGTTTGTGAAAAACTGAGGGACCGAAGTCAACGACACAAGCGTCAGGACATAGAAGTTGGAAAACCTGTGCGCCCTCAGCTAGCACTAAGGGTTAGCAATGCTAGTGCTGCATGGAAAAAGCTTCATGGGAAGGAAGTTGTTGTCGAATGCAAATTTGATGGTGATCGCATCCAAATTCATAAAAATAACTCGGAAATACGTTTCTTTTCTAGAAGTTTTCTTGATCATCCAGAGTATGAACATGCAATGTCAGACATCATTGCAAAGAACATTCTGGTTGACAGGTGTATTCTTGATGGTGAAATGTTGGTCTGGGATACATCTGAAAACCGTTTTGCAGATTTTGGTTCCAATCAGGGAATAGCAAAGGCAGCAAAGGAGGGACTTGATAGTGATCGGCAGATGTGCTATGTTGCTTTTGACATTCTATACGTGGGAGATACCAGTGTTATACACCAAACTTTAGCAGAACGCCATGATCTTCTGCGCAAGGTTGTCAAGTCCATAAAAGGTCGATTGGAAATTTTGGTTCCTAATGGTGGTCTTAACGCAAGTCGCTCTCCTGGTGAGCCATGTTGGTCCTTTGTAGCTCGTAGCCTTGACGAAGTCGAGAAGTTTTTTAAAGACACCATCGAGAATAGGGATGAAGGAATCGTCCTAAAAGATCTTGCTTCCAAATGGGAGCCAAGTGATCGGAGTGGAAAGTGGCTTAAGTTGAAGCCCGAGTATGTTAGAGCTGGTTCTGACTTAGATGTCCTCATTATAGGAGGCTACTATGGTTCTGGACGTCGTGGAGGGGAAGTAGCGCAGTTTTTGGTAGGACTTGCAGAGCGTCCAATGCCAAATACCCATCCTAGGCGGAAATATGAATACCCAAAGAAGGCGGCACCAAGCTTTTATCAAGTTACTAATAATTCGAAAGAGAGGCCAGATGTTTGGATTGAAAGTCCAGAGAAATCAGTTATTGTTTCGATTACTAGTGATATTCGGACCATAAAATCTGAGGTATTTGCTGCACCATACAGCCTGAGATTTCCACGGATTGATCGAGTAAGATTTGACAAGCCTTGGCATGAATGCCTTGATGTGCATACTTTTGTGAAGTTAGTTCATTCCAGCAACGGTACCACACAAAGAGGGGAAGCTTATGGAGATTCACAGGATCATAAACCCAAGCGCATGAAGTCAGCCAAAAAAGGGGAGAAGAATCTTTCAGTTGTTCCTTCTCATTTCATCCAGACTGATGTTTCCACTGTAAAGAGTGAAACGCTTATATTTGCAAAAATGATGTTCTACTTTGCTAATGTTCCTTCATCTCATTCCGTGGATCTGTTGCACAAAATGGTGGTGGAGAATGGGGGCAATTTCTCAATGAATTTGAATAACTCAGTCACACACTGTATTGCAGCTGAAAGTAGAGGAATCAAGTTTCAGGCAGCAAAGCTTCATGGTGATGTTATTCATTATTCTTGGCTTCTCGATTGCTGTTTGCAGAAGAAGCTCCTTCCCTTACAGCCAAAGTACTTTCTTTATCTTTCTGAACGCACGAAGAGAAAGTTAGAGGAAGAAATTGACCAATTCTCTGACTCTTACTATGTGGATGTTGATATTACAGATCTCAGACAGCTTTTGAGCAACATTGATCGAAGAGAGCATCCGAAGAGGATTGACTATTACAAAAAGAAATATTGTCCAAAGGAGGAATGGGCTCGTTTTCTTGGTTGCTGCTTTTACTTTTACTTTCCAGCGCAGTCTATAATTAACTTGGAGTGGAAAGTCCTAGTGGAACTTGCATTGAGGAGATTGAAGGTTGCAGTTTCTTTTGGTGGTGGCAGAATTAGTGATGATCTTTCTCATGCTACCCATGTAATCGTCTTGTCTGGGCCAGAATTAACTGTGGACTTCAATTTGCTATTTAGTAGATTATCAGCTGAGAAGCATCTTCTACTTAGTCAAGGGTTGCATGTTGTTTCTTCTCAGTGGTTGGAGGACTGCATTGAGAAGGACCAGAAATTGTCAGAGGAGAGTTACAGTCTGAAGCCCAACATGCAAGAATGGATATTGGAGAGTGAGCTGAATCTGGACAAGTGGTCTAGTTTGGATAAGGCAGAAGAGCATAATACACCAGTATCTAAAGAATATGGAACTACGACAATTCGTCAAGCTACAACCAACAAACCTAGAGTTGTTACCTTGCCTAAGAAAGAAAGAAGGACAAAAAGAGGAAGATCCAGTGGAACCAATAAAACTAGAGGGAAAACTGTGGTCAACCAGCCACGAAGGGTAAGAGCACGTGGAGGAAAGCCTGCAAAAATAAATGAAGATGAATCAGATGGAAGTGGCTCTTCAGCTAATTTGACCTTTCAGAAAGAATCTGTTGTCCAAACAGGAAATAGTGAAAGCGGTGGGTTGATTGGCAAGCAGAGTCCAACAAAAGAGCATCTGATGATAGAAGATAGCGAATTATCACAAAAAGGGAAAACAATTGAACAATATCCTGAAGATCAAAGCGGAGATGGGATAAGAGTTGTTGAAGATAATGGAATGGGATCAGGCAACAGAAATGGTACTGAAGAGAATGAGAAGCTAGAGCAGATGGTTGATCCTGTTCAAGCCATGTTAATGCACATGATTCCAAGCCTTGGAAATAGTAAGGCTAAAAGTGAGGATCGGGTCATTCGAGATGAAACGTTACCAATAGAAAGCCGAAAGACCAGGGGCACAGATCCTGCTTTTGCAGATGAAGGATCCTCCCTGGATCCTAACCCAAAGCCAGAAAAGAAAAGGAAGGTTAGCTATAAGGATGTGGCTGGGGAGCTGCTCAAGGACTGGTAA
Protein:  
MEESDIKFNVMVSLFNWMQKSKSSATKRSKFRKFLDAFCREPGDYFSAIRLILPVLDRERGSYGLKEHALATCLIDALGMSRDSPDAQRLLNWRKGGPKTGSSAGNFSLVASEVLQRRQGLTSGGLTLKELNEQLDRLSSSENRAEKTAVLSDLIRRTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVRPQLALRVSNASAAWKKLHGKEVVVECKFDGDRIQIHKNNSEIRFFSRSFLDHPEYEHAMSDIIAKNILVDRCILDGEMLVWDTSENRFADFGSNQGIAKAAKEGLDSDRQMCYVAFDILYVGDTSVIHQTLAERHDLLRKVVKSIKGRLEILVPNGGLNASRSPGEPCWSFVARSLDEVEKFFKDTIENRDEGIVLKDLASKWEPSDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPMPNTHPRRKYEYPKKAAPSFYQVTNNSKERPDVWIESPEKSVIVSITSDIRTIKSEVFAAPYSLRFPRIDRVRFDKPWHECLDVHTFVKLVHSSNGTTQRGEAYGDSQDHKPKRMKSAKKGEKNLSVVPSHFIQTDVSTVKSETLIFAKMMFYFANVPSSHSVDLLHKMVVENGGNFSMNLNNSVTHCIAAESRGIKFQAAKLHGDVIHYSWLLDCCLQKKLLPLQPKYFLYLSERTKRKLEEEIDQFSDSYYVDVDITDLRQLLSNIDRREHPKRIDYYKKKYCPKEEWARFLGCCFYFYFPAQSIINLEWKVLVELALRRLKVAVSFGGGRISDDLSHATHVIVLSGPELTVDFNLLFSRLSAEKHLLLSQGLHVVSSQWLEDCIEKDQKLSEESYSLKPNMQEWILESELNLDKWSSLDKAEEHNTPVSKEYGTTTIRQATTNKPRVVTLPKKERRTKRGRSSGTNKTRGKTVVNQPRRVRARGGKPAKINEDESDGSGSSANLTFQKESVVQTGNSESGGLIGKQSPTKEHLMIEDSELSQKGKTIEQYPEDQSGDGIRVVEDNGMGSGNRNGTEENEKLEQMVDPVQAMLMHMIPSLGNSKAKSEDRVIRDETLPIESRKTRGTDPAFADEGSSLDPNPKPEKKRKVSYKDVAGELLKDW